Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs35311242 | chr16:20784146 | G/A | 2.76E-8 | 489 | 15.93 | 15 | 14.07 | KM Plot |
| THCA | rs35312889 | chr7:29538438 | C/T | 6.49E-6 | 489 | 15.83 | 15.9 | 25.03 | KM Plot |
| THCA | rs35374697 | chr16:20610244 | A/C | 4.34E-6 | 483 | 15.93 | 17.55 | 14.27 | KM Plot |
| THCA | rs35390946 | chr16:20725086 | G/A | 3.38E-5 | 490 | 16.37 | 14.67 | 17.65 | KM Plot |
| THCA | rs35396346 | chr16:20794499 | A/T | 4.8E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |
| THCA | rs35414786 | chr10:82238403 | C/T | 5.24E-6 | 468 | 16.38 | 14.8 | 14.93 | KM Plot |
| THCA | rs35426158 | chr4:110770152 | C/T | 6.11E-5 | 489 | 15.87 | 16.23 | 15.3 | KM Plot |
| THCA | rs35470902 | chr14:23225100 | T/C | 1.79E-9 | 489 | 15.3 | 17.05 | 19.02 | KM Plot |
| THCA | rs35506109 | chr16:20765309 | T/C | 5.19E-13 | 488 | 16.02 | 14.85 | 13.6 | KM Plot |
| THCA | rs35508370 | chr15:54230401 | GA/GAA | 4.99E-12 | 486 | 15.63 | 18.23 | 11.8 | KM Plot |
| THCA | rs35509908 | chr11:4162143 | CTT/C | 2.0E-7 | 489 | 19.05 | 13.9 | 16.37 | KM Plot |
| THCA | rs35511780 | chr8:52432036 | C/G | 1.52E-6 | 487 | 14.93 | 18.03 | 18.13 | KM Plot |
| THCA | rs35514700 | chr1:184082334 | A/G | 2.35E-6 | 480 | 15.65 | 17.58 | 25.93 | KM Plot |
| THCA | rs35517729 | chr14:36259731 | TA/T | 5.08E-6 | 490 | 15.97 | 16.07 | 8.33 | KM Plot |
| THCA | rs35518073 | chr16:20740257 | C/T | 3.38E-5 | 490 | 16.38 | 14.47 | 17.65 | KM Plot |